Immunoinformatics Consulting

Decode Immune Responses
in Liquid Biopsy

I help biotech and clinical teams analyze immune responses in liquid biopsy using advanced immunoinformatics — from BCR/TCR repertoire profiling to antibody-antigen interaction modeling.

BCR/TCR Repertoire Analysis
Ab·Ag Interaction Modeling
ctDNA Liquid Biopsy

Immunoinformatics Services

End-to-end analytical support for immune profiling in liquid biopsy — from raw sequencing data to actionable biological insights.

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BCR/TCR Repertoire Analysis

Deep profiling of B-cell and T-cell receptor repertoires from bulk or single-cell sequencing data. Clonotype tracking, diversity metrics, and clonal expansion analysis.

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Antibody–Antigen Interactions

Computational modeling of antibody-antigen binding interfaces. Epitope prediction, affinity estimation, and structural interaction analysis using state-of-the-art tools.

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Liquid Biopsy Immune Profiling

Immune analysis from circulating cell-free DNA and immune cells in plasma. Longitudinal monitoring of immune dynamics for oncology and autoimmune applications.

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Bioinformatics Pipeline Design

Custom analysis pipelines tailored to your sequencing platform and biological question — from QC and preprocessing to statistical modeling and visualization.

Immunoinformatics expertise at the bench-to-data interface

I'm a specialized immunoinformatics consultant bridging the gap between wet-lab immune profiling and computational analysis. My work focuses on extracting meaningful immune signals from liquid biopsy data — a particularly challenging domain where signal-to-noise is critical.

Whether you're building an immune monitoring assay, characterizing antibody responses in a clinical trial, or developing a TCR-based diagnostic, I bring both the domain biology and the analytical rigor to move your project forward.

  • BCR/TCR V(D)J recombination & clonotyping
  • Single-cell and bulk immune sequencing (scRNA-seq, AIRR-seq)
  • Structural antibody modeling & epitope mapping
  • Longitudinal immune repertoire dynamics
  • Clinical data integration & biomarker discovery
Tools & Technologies
IMGT/V-QUEST MiXCR TRUST4 IgBLAST Seurat Scanpy scirpy PyIR AlphaFold2 RoseTTAFold Python R / Bioconductor Snakemake Nextflow Docker AIRR-C
Applications
Oncology Autoimmune Vaccine Development Therapeutic Antibodies Companion Diagnostics Clinical Trials

Let's discuss your project

Whether you have a specific analytical challenge or are scoping a new program, I'm happy to have an initial conversation.

I work with biotech companies, CROs, and academic medical centers on projects ranging from one-off analyses to long-term embedded collaborations. Reach out to explore how I can support your team.

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